MmuEX6028631 @ mm10
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:160946534-160950334:+
Coord C1 exon
chr1:160946534-160946666
Coord A exon
chr1:160948307-160948425
Coord C2 exon
chr1:160950222-160950334
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTTAATTTTATAGATG
3' ss Score
8.45
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTACAGACCCCTGCCTCATTTGCACAGAGTGTTCAGGAGCTAACAATTGCTCTCCAGCGGACTGGAGACCCAGCGAATTTGAACCGACTAAGACCCCATTTGGAGTTACTCGCAAACATTGACCCTAGTCCAG
Seq A exon
ATGCTCCTCCTCCAACATGGGAACAGCTAGAAAATGGGCTGGTTGCTGTACGTACGGTAGTGCATGGATTGGTTGATTATATCCAGAACCACAGCAAAAAAGGAGCAGATCAACAACAG
Seq C2 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAAAGGGGAGGATGCCCTCGTGGTGCCAGCTGTACGTTTGCACATTCACAGGAAGAACTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.525 C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=WD(100=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGACCCCTGCCTCATTTG
R:
TCCAGTTCTTCCTGTGAATGTGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types