GgaEX1048712 @ galGal4
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7337137-7341136:+
Coord C1 exon
chr8:7337137-7337269
Coord A exon
chr8:7339342-7339460
Coord C2 exon
chr8:7341024-7341136
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTGCTAATATTATAGATG
3' ss Score
6.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTGCAGACCCCAGCCTCATTTGCACAGAGTGTTCAGGAGTTAACTATTGCTCTTCAGAGGACTGGAGATCCAGCTAATCTGAATCGTCTTCGACCTCACCTTGAGCTCCTGGCAAATATTGATCCCAGCCCAG
Seq A exon
ATGCTCCACCTCCAACGTGGGAACAACTGGAAAATGGGCTAGTTGCTGTAAGGACTGTGGTTCATGGCTTAGTTGATTATATCCAGAATCACAGCAAGAAAGGAACGGATCAGCAACAG
Seq C2 exon
CCTCCTCAGCACAGCAAATACAAGACGTACATGTGCCGAGACATGAAACAGAGAGGAGGATGCCCCCGAGGGGCCAGCTGCACCTTTGCACATTCACAGGAGGAGCTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-'9-9,'9-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.567 C2=0.728
Domain overlap (PFAM):
C1:
PF051387=PaaA_PaaC=PD(11.0=24.4)
A:
NO
C2:
PF0064219=zf-CCCH=WD(100=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGACCCCAGCCTCATTT
R:
CTAGCTCCTCCTGTGAATGTGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]