HsaEX0054115 @ hg38
Exon Skipping
Gene
ENSG00000170633 | RNF34
Description
ring finger protein 34 [Source:HGNC Symbol;Acc:HGNC:17297]
Coordinates
chr12:121420242-121424351:+
Coord C1 exon
chr12:121420242-121420334
Coord A exon
chr12:121420577-121420778
Coord C2 exon
chr12:121423386-121424351
Length
202 bp
Sequences
Splice sites
3' ss Seq
TGGATGCTCTGTGGTTTCAGAAC
3' ss Score
7.06
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GTACAAAGTGAAATCACTTCAGCAAACACAGAAGATGATGATGACGACGATGATGAGGATGATGATGATGAAGAAGAAAACGCAGAGGATCGG
Seq A exon
AACCCCGGGCTCTCCAAGGAGAGAGTGAGAGCTTCACTGTCTGACTTGTCAAGCCTTGATGATGTGGAAGGAATGAGCGTGCGCCAGCTGAAGGAAATTCTGGCTCGGAATTTTGTCAACTATTCTGGCTGTTGTGAAAAATGGGAACTGGTAGAGAAAGTAAACCGGTTATACAAAGAGAATGAAGAAAACCAAAAGTCCT
Seq C2 exon
ATGGCGAGCGGCTGCAGCTGCAGGATGAGGAAGACGACAGCCTGTGTCGCATCTGCATGGATGCCGTCATCGACTGTGTCCTACTGGAGTGTGGGCACATGGTTACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCCGGCAGTATGTGGTGCGAGCCGTGCACGTGTTCAAGTCCTGAAACAGGCTCCCCTCACCAGGACAGTCACCCCCAAACTTGACCCCCAACATTTCAATGCACAGAAGGGACTGGAAAGTTATGTTCAAAGGCTGAAGCTATTTTAAAACATTATTTTGACTACTAAGTGGGGACAGAAAGATCCATCCTGAGTTGTGGAAACATTGGTCCATGCCGTGAGCCTGTCTGCCTGTGGACACGTGAGCTTCCCGGGCTCAGCTGGGCTTTATCACACATCCCGTGAACACTCATTGAAGTCAGCCTGTTTGCGCCATGTGGGCATCAGCCACTGCTGTCTTGGGAGGACACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170633-'25-29,'25-25,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.213 C2=0.074
Domain overlap (PFAM):
C1:
PF0306610=Nucleoplasmin=FE(28.8=100)
A:
PF0306610=Nucleoplasmin=PD(6.7=10.3),PF102084=Armet=PU(93.7=86.8)
C2:
PF102084=Armet=PD(4.8=6.7),PF139201=zf-C3HC4_3=PU(80.5=73.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGACGATGATGAGGATGA
R:
ATGTTGGGGGTCAAGTTTGGG
Band lengths:
293-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development