MmuEX6020736 @ mm10
Exon Skipping
Gene
ENSMUSG00000029474 | Rnf34
Description
ring finger protein 34 [Source:MGI Symbol;Acc:MGI:2153340]
Coordinates
chr5:122866802-122871291:+
Coord C1 exon
chr5:122866802-122866906
Coord A exon
chr5:122867120-122867321
Coord C2 exon
chr5:122868037-122871291
Length
202 bp
Sequences
Splice sites
3' ss Seq
AACAGATACTCTGATTTCAGAAC
3' ss Score
3.55
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTACAAAGTGAAATAGCTTCAGCAAACACAGATGATGATGACGACGACGATGATGATGACGACGATGATGAAGATGACGACGACGAACAAGAGGAGGAGGAACAG
Seq A exon
AACCCGGGGCTCTCTAAAAAGAAAGCAAGAGCTTCCCTGTCTGACCTCTCAAGCCTTGAAGAGGTAGAAGGGATGAGTGTGCGCCAGCTGAAGGAGATCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGTTGTGAAAAATGGGAGCTGGTAGAGAAAGTCAACCGGCTGTACAAAGAGAATGAAGAAAACCAAAAGTCAT
Seq C2 exon
ATGGTGAGCGGATGCAACTTCAGGATGAGGAAGATGACAGCCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGGAGTGCGGGCACATGGTCACCTGCACCAAGTGTGGCAAGCGAATGAGTGAGTGTCCCATCTGCAGGCAGTATGTGGTTCGAGCTGTGCATGTTTTTAAGTCATGAAATTGAGGGCCCTGCAGTAGGACACTCACATGACATTACCCCAAACATTTCAGTGCACTAGAGGGACTGGAAACTTCTTGTTCTAAGGCAAAAGCTATTTTCAAAAATTATTTTCATTACTAACTGGGGACAGAAAGTTCACCCTAAGTTGCAGAAACCTGGCCAGTGCCATGACCCATCTCCCTGTGGACACACGGCTTTCCCAGGTTCTGCTGGGTTTTGTCTCCCCTGAGCACTAGCTGAAGCCAAACTGTTCAGTGTGGGTGTGGAAGCCACTCACTCGCCTGTCTTCCCTTACTTTACCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029474-'13-17,'13-13,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.250 C2=0.095
Domain overlap (PFAM):
C1:
PF045468=Sigma70_ner=FE(37.8=100)
A:
PF045468=Sigma70_ner=PD(34.4=45.6),PF102084=Armet=PU(93.7=86.8)
C2:
PF102084=Armet=PD(4.8=4.7),PF139201=zf-C3HC4_3=WD(100=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACGACGAACAAGAGGAG
R:
TCCAGTCCCTCTAGTGCACTG
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types