BtaEX6072568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002315 | RNF34
Description
Bos taurus ring finger protein 34 (RNF34), mRNA. [Source:RefSeq mRNA;Acc:NM_001014858]
Coordinates
chr17:56021830-56025165:-
Coord C1 exon
chr17:56025064-56025165
Coord A exon
chr17:56024606-56024807
Coord C2 exon
chr17:56021830-56022764
Length
202 bp
Sequences
Splice sites
3' ss Seq
GATGCACTCTGTGATTTCAGACG
3' ss Score
4.25
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGCCCAGTGAAATAGCTTCAGCAAACACAGAAGACGATGAAGATGATGATGACGACGACGACGATGACGACGACGATGACGAAGAAAACTTGGAGGACCGG
Seq A exon
ACGCCTGGCCTCACCAAGAAGAGAGTGAGAGCTTCTCTGTCCGACTTGTCAAGCCTTGAGGACGTGGAGGGGATGAGCGTGCGCCAGCTGAAGGAGATCCTGGCTCGGAATTTCGTCAACTATTCTGGCTGCTGTGAAAAATGGGAGCTAGTAGAGAAAGTAAACCGGTTATACAAAGAGAATGAAGAAAACCAAAAGTCAT
Seq C2 exon
ATGGTGAGCGGCTGCAGCTGCAGGACGAGGAGGACGACAGCCTGTGCCGAATCTGCATGGACGCCGTCATCGACTGCGTCTTGCTCGAGTGCGGGCACATGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGCGAGTGTCCCATCTGCCGGCAGTACGTGGTGCGCGCTGTGCATGTGTTCAAGTCCTGAAGCCCAGCCCCCGCGCTGAGCTCGATCCTAGACATTTCCATGCACAGAGGGGACTGGACACTTCCTGTTCGAAAGCTGAAGCTATTTTTAAAAAATTATTTTCACTCCTAACTGGGGACGGGAAAGATTCATCCTGAGTCGCGGCCACACTGGTCCATGCTGTATGCCCGTCAGCCTGAGCACGGGCTGTTTCCCAGGTTCTGCTGGGCTCCCTCACAACGCCTCTGATCACTCCTCGCTCAAGTGGACTGCTTATGGCATCAGCTACTGCTCTCTTTGCAGGACATTTCTCTTGTTCTCTTGTTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002315-'9-10,'9-7,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.118 C2=0.079
Domain overlap (PFAM):
C1:
PF0306610=Nucleoplasmin=FE(30.8=100)
A:
PF0306610=Nucleoplasmin=PD(6.5=10.3),PF102084=Armet=PU(93.8=89.7)
C2:
PF102084=Armet=PD(4.6=4.7),PF139201=zf-C3HC4_3=WD(100=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATGACGACGACGATGAC
R:
GAAGTGTCCAGTCCCCTCTGT
Band lengths:
297-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]