DreEX6051090 @ danRer10
Exon Skipping
Gene
ENSDARG00000038300 | rnf34a
Description
ring finger protein 34a [Source:ZFIN;Acc:ZDB-GENE-030131-6135]
Coordinates
chr8:40187957-40192825:+
Coord C1 exon
chr8:40187957-40188019
Coord A exon
chr8:40192350-40192551
Coord C2 exon
chr8:40192796-40192825
Length
202 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGCCGTTACTATCAGGTT
3' ss Score
7.79
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GATATTGAGGACTCCACTTCAGTCTCACTCCTTAACCTTGACCAGACAGAACACACGCCAGAG
Seq A exon
GTTAGTCCTCAGACACGGCGACGGGCTAGAGCGTCTCTGTCAGACCTGTCCTCGCTGGATGACGTGGAGCAGTTGACTGTCCGGCAGCTGAAGGAGATCCTGGCGAGGAACTTTGTAAGCTTCTCTGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTCAGGAGGCTTTATCGGGAGAACGAGGACAATCGCAAATCTA
Seq C2 exon
TGGAAAACGTGAGCAACCCCATCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038300-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.309 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
PF102084=Armet=PU(92.1=85.3)
C2:
PF102084=Armet=PD(6.3=36.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]