RnoEX6064441 @ rn6
Exon Skipping
Gene
ENSRNOG00000001331 | Rnf34
Description
ring finger protein 34 [Source:RGD Symbol;Acc:628636]
Coordinates
chr12:39164290-39168092:-
Coord C1 exon
chr12:39167973-39168092
Coord A exon
chr12:39167569-39167770
Coord C2 exon
chr12:39164290-39165199
Length
202 bp
Sequences
Splice sites
3' ss Seq
AACAAACACTGTGATTTCAGAAC
3' ss Score
3.16
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GTACAAAGTGAATTAGCTTCAGCAAACACGGATGATGAGGATGGGGAGGAAGATGACGACGATGATGACGATGACGACGACGAGGATGACGATGAACAAGAAGAAAACTTAGAGGAACAG
Seq A exon
AACCCGGGGCTCTCTAAGAAGAAGGCGAGAGCTTCCCTGTCCGACCTGTCAAGCCTTGAAGAGGTGGAAGGGATGAGCGTGCGCCAGCTGAAGGAAATCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGCTGTGAAAAGTGGGAGCTGGTGGAGAAAGTCAACCGGCTGTACAAGGAGAATGAGGAAAACCAAAAGTCAT
Seq C2 exon
ATGGTGAGCGGATGCAACTTCAGGATGAGGAAGACGACAGCCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGGAGTGTGGGCACATGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCAGGCAGTATGTGGTTCGAGCTGTGCATGTTTTCAAGTCCTGAAATTGAGGCCCCTACAGTGGGACACTCACATGACCCCAAACATTTCAGTGCACTAAAGGGACTGGAAACTTACTGTTCTAAGGCAGAAGCTATTTTTTAAAATTATTTTCATGACCAACTGGGGACAGAAAGTTCATCCTAAGTCTTAGAAACCTGGGCTGTGCCATAGGCCCGTCAACCGTGGACACATGGCTTCCCAGGTTCTGCTGAGTTCTGTCACTTGTCTCCCCTGAGCACTAGGTGAAGCCAGACTGTTCAGTGTGGGTGTGGAGGCCACTCGCCTGTCTCTTACTTTACCTTTATCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001331-'16-7,'16-6,17-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.250 C2=0.079
Domain overlap (PFAM):
C1:
PF148121=PBP1_TM=FE(56.5=100)
A:
PF148121=PBP1_TM=PD(23.2=23.5),PF102084=Armet=PU(94.2=95.6)
C2:
PF102084=Armet=PD(4.3=4.7),PF139201=zf-C3HC4_3=WD(100=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGGAGGAAGATGACGA
R:
TGTGAGTGTCCCACTGTAGGG
Band lengths:
303-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]