GgaEX1049743 @ galGal3
Exon Skipping
Gene
ENSGALG00000004190 | RNF34
Description
NA
Coordinates
chr15:5517781-5520955:+
Coord C1 exon
chr15:5517781-5517837
Coord A exon
chr15:5518079-5518280
Coord C2 exon
chr15:5519612-5520955
Length
202 bp
Sequences
Splice sites
3' ss Seq
CATACGGTTGTGTGTTTCAGACT
3' ss Score
7.78
5' ss Seq
CGCGTAGGT
5' ss Score
4.99
Exon sequences
Seq C1 exon
GGCCAAACTGAAACATCTTCTATAAATAACGATGACGAAGAAAGTGCTGAGGAACAG
Seq A exon
ACTCCCGGATTGTCCAGGAAACGAGCAAGAGCCTCTCTGTCTGATATTTCAAGTCTGGACGACATCGAAGGCTTGAGTGTTCGGCAGCTGAAGGAGATCCTTGCATGTAATTTTGTCAACTACTCAGGATGCTGTGAGAAATGGGAACTCGTGGAAAAAGTGAGCAGGCTGTACAGAGAGAGTGAGGAAAACCACAAAACGC
Seq C2 exon
AGGGTGAGAAGGTACAGCTGAATGACAACGACGACAACTTGTGCCGGATCTGCATGGATGCAGTGATCGACTGCGTCCTGCTGGAATGCGGCCACATGGTGACTTGCACAAAGTGCGGCAAGAGAATGAGCGAGTGCCCCATCTGCCGGCAGTACGTTGTACGGGCTGTGCATGTGTTTAAATCTTAAATGAAGACCAAAAGCAAATTTTAGTCACCCTTTGACTACCAGGATTTCTGTGGGCAGGAGTGCTGAACGCTGGGGCGCAGATCAGATTTTTAATTCTCAAACACAACATTTTGAACATCAGGACATAGAAGTTTATGAACGCTTTTTTACAGCATACTTAATCTGACGGTTGGGCGGGATGATGTGATGCCTGTGCGAACAGTGATAGAGCTGCCTGACTTTCCTTAAACCCACAAACTGTTCGAGTCAAACTGTTTACAGCAGTTATTGCTCTCTTCTGAAGAATATCAGCCCTAGTTATTGCATTCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004190-'8-6,'8-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.221 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF102084=Armet=PU(93.4=83.8)
C2:
PF102084=Armet=PD(4.9=4.8),PF139201=zf-C3HC4_3=WD(100=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAAGAAAGTGCTGAGGA
R:
AAAATCTGATCTGCGCCCCAG
Band lengths:
303-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]