HsaEX0054119 @ hg19
Exon Skipping
Gene
ENSG00000170633 | RNF34
Description
ring finger protein 34, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17297]
Coordinates
chr12:121837902-121855714:+
Coord C1 exon
chr12:121837902-121838021
Coord A exon
chr12:121853962-121854180
Coord C2 exon
chr12:121855307-121855714
Length
219 bp
Sequences
Splice sites
3' ss Seq
GGATTTGTGTTCCTTTTTAGGCG
3' ss Score
9.65
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCGCCTCCCGGGGCGCGGTAATCACCGCCCAGAGGGAAGGAGGTCGGCAGTGTGAGGAGCTGCTATGGTGCTGAGTTTCCTGGTAGAGCCGGCCGAGCTGAGGCGGTCGCGGCCATGAAG
Seq A exon
GCGGGTGCCACGTCTATGTGGGCTTCGTGCTGTGGGCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGGGGCCAGCAGTCAGCATTTGCAGGAGCCACCGGTCCATTCAGATTTACACCAAACCCTGAGTTTTCCACCTACCCACCAGCAGCTACGGAAGGGCCCAACATAGTTTGTAAAGCCTGTGGGCTTTCATTTTCAGTCTTTAGAAAGAAG
Seq C2 exon
CATGTTTGCTGTGACTGCAAGAAGGATTTTTGCTCCGTTTGTTCAGTCTTACAAGAAAATCTCCGTAGATGTTCTACTTGTCACTTATTACAAGAGACAGCATTTCAGCGCCCTCAGTTAATGCGACTGAAGGTGAAGGACCTGCGGCAGTATCTCATTCTGAGAAATATACCCATAGATACTTGTCGTGAGAAAGAAGACTTGGTGGATCTAGTACTGTGCCATCATGGACTAGGCTCTGAGGACGACATGGACACAAGCAGTCTGAATTCTTCAAGGTCCCAGACTTCTAGCTTTTTTACACGTTCGTTTTTTTCAAACTATACAGCCCCCTCTGCTACTATGTCTTCGTTTCAGGGAGAGCTTATGGATGGAGACCAAACATCCAGATCTGGAGTGCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170633_MULTIEX1-3/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045468=Sigma70_ner=PU(27.3=15.4),PF0306610=Nucleoplasmin=PU(61.5=47.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTCCTGGTAGAGCCGG
R:
CCATGTCGTCCTCAGAGCCTA
Band lengths:
302-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)