RnoEX0076502 @ rn6
Exon Skipping
Gene
ENSRNOG00000001331 | Rnf34
Description
ring finger protein 34 [Source:RGD Symbol;Acc:628636]
Coordinates
chr12:39170342-39185168:-
Coord C1 exon
chr12:39185068-39185168
Coord A exon
chr12:39172881-39173099
Coord C2 exon
chr12:39170342-39170749
Length
219 bp
Sequences
Splice sites
3' ss Seq
ACACGTATGTTTCTTTTCAGGCG
3' ss Score
9.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCGCCGCCTTAGAAGGAAGGAGGTCCGTTGTGTGAGCAGTCTGCTATGGTGCTGAGTTCCCGGGTAGAGCCGACCGAGCCGAGGCGGTCGCGGCCATGAAG
Seq A exon
GCGGGTGCTACCTCTATGTGGGCTTCATGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCCAGCAGGCAGGATTCCCAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTACCTACCCACCAGCAGCTACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCAGTCTTTAGAAAGAAG
Seq C2 exon
CACGTCTGCTGTGACTGCAAGAAGGACTTTTGCTCCCTTTGTTCGGTCTCACAAGAAAACCTCCGCAGATGCTCTACATGTCACCTACTCCAAGAGACAGCCTTCCAGCGCCCTCAGTTGATGAGACTAAAAGTGAAGGACCTGCGGCAGTATCTGCTCCTCAGAAACGTACCGACCGACACTTGTCGCGAGAAGGAGGACTTAGTGGATCTAGTGCTGTGCCATCGTGGACTGGGCTCGGGGGATGGCCTGGACTCAAGGAGTCTCAGTTCCTCAAGATCCCAGACTTCTAGTTTTTTTACACAATCCTATTTTTCAAATTATACACCCCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTGATGGACAGAGAGGGCACCTTCAGGTCAGAAGTTCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001331-'5-4,'5-3,12-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF148121=PBP1_TM=PU(15.9=8.1)
Main Skipping Isoform:
ENSRNOT00000001799fB12579
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAAGGAGGTCCGTTGT
R:
TAAGTCCTCCTTCTCGCGACA
Band lengths:
295-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]