BtaEX6072566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002315 | RNF34
Description
Bos taurus ring finger protein 34 (RNF34), mRNA. [Source:RefSeq mRNA;Acc:NM_001014858]
Coordinates
chr17:56026658-56042534:-
Coord C1 exon
chr17:56042447-56042534
Coord A exon
chr17:56030072-56030290
Coord C2 exon
chr17:56026658-56027065
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGTTCCTTTTCAGGCG
3' ss Score
12.32
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGGGAGGAGGGCGGTTGTGCTAGAAGCTGCTATGGTGCTGAGTTCCCTGGCAGAGCCGACCCAGACGCGGCGGTCGCGGCCATGAAG
Seq A exon
GCGGGTGCTACGTCTATGTGGGCTTCGTGCTGTGGGCTACTGAACGAAGTCATGGGGACTGGAGCTGTCAGGGGCCAGCAATCTGGATTTGCAGGAGGCACTGGTCCATTCAGATTTACACCAAATTCTGATTTTTCTGCTTACCCACCAGCATCTGCAGAAGGGCCTAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCAGTCTTTAGAAAGAAG
Seq C2 exon
CATGTATGTTGTGACTGCAAGAAAGATTTTTGCTCCGTGTGTTCAGTCTTACAAGAAAATCTCCGTAGATGTTCCACTTGTCACTTATTACAAGAGACAGCCTTTCAGCGCCCTCAGTTAATGCGACTGAAAGTGAAGGATCTCCGACAGTATCTCATCCTTCGAAACATACCGATTGATACCTGTCGGGAGAAAGAAGACTTGGTGGACCTGGTCCTGTGCCACCATCGGCTGGGCTCTGAGGATGACTTGGACACGAGCAGTCTCAATTCCTCAAGGTCCCAGACTTCTAGCTTTTTTACACACTCATTTTTTTCAAACTATACAGCCCCGTCTGCTACCGCATCTTCGTTTCAGGGAGAGCTTATGGGTGGAGACCGGACCTTAGGATCTGGAGCGCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002315-'2-5,'2-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0306610=Nucleoplasmin=PU(59.8=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGTGCTAGAAGCTGCTA
R:
GACCAGGTCCACCAAGTCTTC
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]