DreEX6051092 @ danRer10
Exon Skipping
Gene
ENSDARG00000038300 | rnf34a
Description
ring finger protein 34a [Source:ZFIN;Acc:ZDB-GENE-030131-6135]
Coordinates
chr8:40176727-40184299:+
Coord C1 exon
chr8:40176727-40176861
Coord A exon
chr8:40181624-40181842
Coord C2 exon
chr8:40184112-40184299
Length
219 bp
Sequences
Splice sites
3' ss Seq
GTCAAATGTTTTGTGTGCAGGCG
3' ss Score
7.16
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CATAGCGATCCTCCTGGTGCGGCTTTAGAGACAACGACAGAAAAAAATGAAGAGTTAGCCGTGCACGAGCAATGTACAGGCTGCTTTTACTAACAGCTGGGTGACTCCCCGCGGTGTGCTGGAGTTGCTATGAAG
Seq A exon
GCGGGGGCCTCGTCCATGTGGGCATCATGCTGTGGTCTGCTGAATGAGGTGATGGGTACTGGGGCCGTAAGAGGGCAGCAGCCAGGTTTCGGGGCAGGTGCGGGGCCGTTTCGTTTCGCGCCTACTGCCGGATACTCCACATACCCGCCCGCCAACTCCAACAGCACCAGCCTGGTGTGTCAAGCCTGTAGACAAGCGTTCTCTGTCTTCAGGAGGAGG
Seq C2 exon
TACATCTGTTGTGACTGTACGAAGAGTTTCTGTTCACTCTGCTCGGTTCTTCAAGAAAACCTGCGCAGATGCACAACTTGTCACCTACTGAAGGGCACTGCATTCCAGCGGTCGCAGCTCATGCGTCTGCGTGTTAAAGACCTGCGGCAGTACCTCATGTTACGCAACATTAACACTGATACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038300-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0136316=FYVE=PU(26.7=32.9)
C2:
PF0136316=FYVE=FE(68.9=100),PF102084=Armet=PU(72.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCCTGGTGCGGCTTTA
R:
CGTAACATGAGGTACTGCCGC
Band lengths:
293-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]