MmuEX0040181 @ mm9
Exon Skipping
Gene
ENSMUSG00000029474 | Rnf34
Description
ring finger protein 34 [Source:MGI Symbol;Acc:MGI:2153340]
Coordinates
chr5:123300197-123314403:+
Coord C1 exon
chr5:123300197-123300307
Coord A exon
chr5:123311698-123311916
Coord C2 exon
chr5:123313996-123314403
Length
219 bp
Sequences
Splice sites
3' ss Seq
GCCTGTATGTTTCTTTTCAGGCG
3' ss Score
10.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCGCCGCATTCGCCGCCTTAGAAGGAAGGAAGATCCGTTGTGTGAGGAGGCTGCTATGGTGCTGAGTTCCCCGGTAGAGCCGACCGAGCCGAGGCGGTCGCGGCCATGAAG
Seq A exon
GCGGGTGCTACTTCTATGTGGGCTTCATGCTGTGGGCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACCGAGCTCTGACTTCCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGTGGGCTTTCGTTTTCAGTCTTTAGAAAGAAG
Seq C2 exon
CATGTCTGCTGTGACTGCAAGAAGGATTTCTGCTCCCTCTGCTCAGTCTCCCAAGAAAACCTCCGCAGATGTTCTACTTGTCACCTACTACAAGAGACGGCCTTCCAGCGCCCTCAGTTGATGCGACTAAAAGTGAAGGACCTGCGGCAGTATCTCCTCCTCAGAAACATACCAACCGACACTTGTCGTGAGAAGGAAGACTTGGTGGATCTAGTACTGTGCCACCGTGGACTAGGCTCAGGGGATGACCTGGACTCAAGTAGCCTGAATTCCTCAAGGTCCCAGACTTCTAGTTTTTTTACACAGTCCCTCTTTTCAAATTACACTCCTCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTCATGGACAGAGATGGCGCCTTCAGATCAGAAGTCCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029474_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045468=Sigma70_ner=PU(24.4=16.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTATGGTGCTGAGTTCCC
R:
TCCACGGTGGCACAGTACTAG
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types