GgaEX1049742 @ galGal4
Exon Skipping
Gene
ENSGALG00000004190 | RNF34
Description
E3 ubiquitin-protein ligase RNF34 [Source:RefSeq peptide;Acc:NP_001006188]
Coordinates
chr15:5460336-5464849:+
Coord C1 exon
chr15:5460336-5460398
Coord A exon
chr15:5463384-5463602
Coord C2 exon
chr15:5464460-5464849
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTCTACGCTTCCAGGCA
3' ss Score
9.28
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCAGGGCGGGGGTCGGCGCCGGGGAGGGCGCCGTGCTGAGGCGGCGGCGGAGCGGCCATGAAG
Seq A exon
GCAGGAGCTACTTCCATGTGGGCTTCCTGCTGCGGGTTGCTGAATGAAGTCATGGGGACTGGAGCTGTCCGTGGCCAACAGTCCGGCTTTGCAGGAGGCGCTGGCCCGTTCCGCTTTGCACCAAACGCGGCTTTTTCATCGTGTCCGTCTCCAGCTGCAGCAGCTGCTAATGTGGTTTGCAAAGCCTGTGGACTTCCCTTTTCAGTGTTTAGGAAAAAA
Seq C2 exon
CATGTGTGTTGTGACTGCAAGAAGGATTTTTGCTCAGTTTGTTCTGTCTCACAAGAGAATCTCAGAAGATGTTCTACTTGTCACTTGCTGCAAGAAACAGCATTTCAGCGGCCACAGCTCATGAGATTGAAAGTCAAGGACCTGCGTCAGTACCTTATTCTCAGAAACATACCGACAGATACTTGCAGGGAGAAAGAAGACCTGGTGGATCTCGTGCTGTGCCACCACGGCTTAGGCTCTGAGGAGGATATGGACGCTGGTAGCTTGCGCTCATCACGGTCACAGACTTCTGGGTTTTTTACTCATCCATTTTCTATGTCTGTGTCAGTGTCGTCTCAAGGAGACCTTGCAAACAGAGGGGGAAGCACAGGAAATGGGACACCTTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004190-'1-2,'1-0,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]