HsaEX0054662 @ hg19
Exon Skipping
Gene
ENSG00000245958 | RP11-33B1.1
Description
NA
Coordinates
chr4:120375946-120381399:+
Coord C1 exon
chr4:120375946-120376288
Coord A exon
chr4:120379126-120379325
Coord C2 exon
chr4:120381338-120381399
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTATTTCTTTTAGGCG
3' ss Score
9.99
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCGGAACTCGCGGCGGGGCTGCTGGGTCTTCCAGGAGCGCGCTTGAGCGGACGCTGCCTACCGGTGGCCGGGCGGGATGTAACCCGCTGCTGAGCTGGCAGCTCTGTGTCGCTAGGCTTCGGCCCGGCCGCCGCCGCACATAAGCTGCGAGGAGGAGCTTTACGACTTCCCGGTCTTCGGGGCCGGGCGCAGCAAGGGCCAGACTCTGCGCTAGCAGGCGCTGCGCGCCAACCGGCCGGCACCTGTCGCAGAAGGTGCAACCGATCGCACTGTCGCGCCGAAGCTCCTCAATGGCCAGCGCCAGCTGCAGCCCCGGCCGCCCACTCGCCTCACCTGAGCCTGG
Seq A exon
GCGAATCTGGATTGGGAAAGTTGACATTAATCAACTCATTATTCCTCCCAGATTTGTATTCTCCAGAGTATCCGGGTCCTTCTCAGAGAATTAAAAAGCCTGTACAGGTCTAGATATTGGTATTTTTAATTGATGATAAGCTGGAATAATATTAATACACACAAAGCACGTGTTGTAACTTTTATTATGCTTCCTTAGAG
Seq C2 exon
GAGCTTGAAAAATCACATTTGAGAAGAGGATTGGATCCTAGCCATAACATAAATATAAGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245958_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTAACCCGCTGCTGAG
R:
GGATCCAATCCTCTTCTCAAATGTGA
Band lengths:
307-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)