GgaEX1051824 @ galGal3
Exon Skipping
Gene
ENSGALG00000012138 | F1NIP9_CHICK
Description
NA
Coordinates
chr2:46976873-47011997:-
Coord C1 exon
chr2:47011895-47011997
Coord A exon
chr2:46982952-46983058
Coord C2 exon
chr2:46976873-46976973
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTGTTTCCTTGCAGGTG
3' ss Score
14.29
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAACAGAAGAACCTTGAAGGATATGTGGGGTTTGCAAATCTTCCAAATCAAGTTTACCGGAAGTCCGTGAAGAGAGGATTTGAGTTCACACTCATGGTAGTAG
Seq A exon
GTGAATCTGGACTGGGAAAATCAACATTAATCAACTCATTATTCTTAACGGAATTATATTCCCCGGAGTATCCAGGTCCTTCACACAGAATTAAAAAGACTGTACAG
Seq C2 exon
GTTGAGCAGTCAAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTACTACTTACAATAGTTGACACACCAGGATTTGGAGATGCTGTGGATAATAGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012138-'1-6,'1-1,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.6=28.6)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAACCTTGAAGGATATGTGG
R:
CAATTACTATTATCCACAGCATCTCC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]