DreEX0065312 @ danRer10
Exon Skipping
Gene
ENSDARG00000052673 | sept7b
Description
septin 7b [Source:ZFIN;Acc:ZDB-GENE-030131-37]
Coordinates
chr16:47472994-47491396:-
Coord C1 exon
chr16:47491350-47491396
Coord A exon
chr16:47479572-47479678
Coord C2 exon
chr16:47472994-47473111
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCTTTTTTTTTCAGGAG
3' ss Score
11.54
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAGAACGATCGGTTTCTAAAGCAGCACTTGAACATCAATATTATGG
Seq A exon
GAGAATCGGGGTTGGGAAAGTCCACACTGATAAATTCTCTGTTCCTGACCGATCTGTACTCTGGAGAATATCCTGGGCCTTCGAACAGAATCAAGAAAACTGTTCAG
Seq C2 exon
GCTGAAACCTTTGGACATCGAGTTTATGAAACGGTTGCACGAGAAGGTCAACATCATCCCACTGATCGCCAAAGCAGATACGCTGACCCCTGAAGAGTGCCAACAGTTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052673_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.003
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(0.5=50.0)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=PU(13.6=94.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGATCGGTTTCTAAAGCAGC
R:
CTGTTTCTTGAACTGTTGGCACT
Band lengths:
162-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]