HsaEX6007756 @ hg19
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:1717]
Coordinates
chr7:35872408-35912376:+
Coord C1 exon
chr7:35872408-35872510
Coord A exon
chr7:35903162-35903268
Coord C2 exon
chr7:35912276-35912376
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTATTTCTTTTAGGTG
3' ss Score
11.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGCTTATGGTAGTGG
Seq A exon
GTGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGTCCTTCTCATAGAATTAAAAAGACTGTACAG
Seq C2 exon
GTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTCACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.6=28.6)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=FE(11.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGAAGAACCTTGAAGGCT
R:
ATTACTATTATCCACTGCATCTCCA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)