HsaEX6007756 @ hg38
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:HGNC:1717]
Coordinates
chr7:35832798-35872766:+
Coord C1 exon
chr7:35832798-35832900
Coord A exon
chr7:35863552-35863658
Coord C2 exon
chr7:35872666-35872766
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTATTTCTTTTAGGTG
3' ss Score
11.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGCTTATGGTAGTGG
Seq A exon
GTGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGTCCTTCTCATAGAATTAAAAAGACTGTACAG
Seq C2 exon
GTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTCACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-'7-29,'7-26,25-29
Average complexity
S
Mappability confidence:
96%=95=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(32.3=28.6)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGAAGAACCTTGAAGGCT
R:
ATTACTATTATCCACTGCATCTCCA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains