MmuEX6064652 @ mm10
Exon Skipping
Gene
ENSMUSG00000001833 | Sept7
Description
septin 7 [Source:MGI Symbol;Acc:MGI:1335094]
Coordinates
chr9:25265394-25286768:+
Coord C1 exon
chr9:25265394-25265496
Coord A exon
chr9:25277544-25277650
Coord C2 exon
chr9:25286668-25286768
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTATTTATTTTAGGTG
3' ss Score
12.15
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
CAACCGAAGAACCTTGAGGGCTATGTGGGCTTTGCCAACCTCCCAAATCAAGTGTACAGAAAATCCGTGAAAAGAGGATTTGAATTCACTCTTATGGTAGTAG
Seq A exon
GTGAATCTGGACTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGACCTTCTCATAGAATCAAAAAGACTGTACAG
Seq C2 exon
GTGGAGCAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTGACAATAGTTGATACTCCAGGATTTGGAGATGCAGTGGATAATAGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001833-'4-13,'4-12,9-13
Average complexity
S
Mappability confidence:
83%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.6=28.6)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGAAGAACCTTGAGGGC
R:
ATTACTATTATCCACTGCATCTCCA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types