BtaEX6027551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001182 | CDC10
Description
Bos taurus septin 7 (SEPT7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001168]
Coordinates
chr4:61642101-61669230:-
Coord C1 exon
chr4:61669120-61669230
Coord A exon
chr4:61654773-61654879
Coord C2 exon
chr4:61642101-61642201
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTTGTTTCTTTTAGGTG
3' ss Score
13
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTTCTCAGCAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCAAATCTCCCAAATCAAGTATACAGAAAATCAGTGAAGAGAGGTTTTGAATTCACACTTATGGTTGTCG
Seq A exon
GTGAATCTGGACTGGGAAAGTCAACATTAATCAACTCATTATTCCTCACAGATTTATATTCTCCAGAGTATCCAGGTCCTTCCCATAGAATAAAAAAGACTGTACAG
Seq C2 exon
GTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTCACAATAGTCGATACCCCAGGATTCGGAGATGCAGTGGATAATAGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001182-'7-9,'7-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.6=28.6)
A:
PF0073513=Septin=FE(12.6=100)
C2:
PF0073513=Septin=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCAGCAACAGAAGAACCTTGA
R:
ATTACTATTATCCACTGCATCTCCGA
Band lengths:
210-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]