DreEX0065256 @ danRer10
Exon Skipping
Gene
ENSDARG00000102889 | sept15
Description
septin 15 [Source:ZFIN;Acc:ZDB-GENE-061103-265]
Coordinates
chr25:12775666-12805084:-
Coord C1 exon
chr25:12804985-12805084
Coord A exon
chr25:12783745-12783851
Coord C2 exon
chr25:12775666-12775766
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTTTCCTGTTTAAGGTG
3' ss Score
9.81
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAGAGGAATCTGGAGGGTTATGTTGGATTCGCCAACCTCCCCAACCAGGTGTACAGGAAATCTGTGAAGAGGGGCTTCGAGTTCACGCTCATGGTTGTCG
Seq A exon
GTGAGTCTGGACTGGGCAAATCAACGCTCATCAATTCCCTCTTCCTGACAGACCTGTATTCCAAAGACTACCCTGGACCATCTCAGAGGATCAAGAAGACTGTTCAG
Seq C2 exon
GTTGAACAGTCCAAAGTGCTGATAAAGGAGGGGGGCGTCCAGCTCACACTCACCATCGTCGACACACCAGGATTTGGAGATGCGGTGGACAACAGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102889_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(5.2=29.4)
A:
PF0073513=Septin=FE(18.0=100)
C2:
PF0073513=Septin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCTGGAGGGTTATGTTGGA
R:
TTGCTGTTGTCCACCGCATC
Band lengths:
195-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]