HsaEX0057979 @ hg19
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152060927-152065440:-
Coord C1 exon
chr4:152065372-152065440
Coord A exon
chr4:152065062-152065202
Coord C2 exon
chr4:152060927-152060999
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGTGGTATTGTACCTTGCAGCGT
3' ss Score
6.42
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGATATTGTCTCTCAAAACCCCGGAGAACTCTCTTGTAAG
Seq A exon
CGTGGGGATGTACTTGTGATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGTCTCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAAC
Seq C2 exon
GATCCAAGCCACGCTCAGAAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTCTTCATGATTTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686-'18-25,'18-24,19-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.518 C2=0.462
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(33.3=78.3)
A:
PF0765312=SH3_2=PD(63.0=72.3)
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCTCATGGAATTGCC
R:
TGCTGGGAAATCATGAAGAACGA
Band lengths:
138-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)