MmuEX6071681 @ mm10
Exon Skipping
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86106970-86113178:+
Coord C1 exon
chr3:86106970-86107038
Coord A exon
chr3:86107212-86107352
Coord C2 exon
chr3:86113106-86113178
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGTGCTGTTGTGCTTTACAGCGT
3' ss Score
8.62
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGACATTGTCTCCCGAAACCCCACGGAACTCTCTTGTAAG
Seq A exon
CGTGGGGATGTCCTTGTGATCCTGAAGCAGGCAGAAAATAATTACTTGGAATGCCAACGGGGAGAAGGCACCGGCAGAGTCCACCCATCCCAGATGAAGATTGTCACTCCCCTGGACGAGCGCCCGAGAGGCAGACCTAAC
Seq C2 exon
GATTCAGGCCACAGTCAGAAGCCTGTAGACAGTGGTGCTCCTCACGCTGTGGCTCTTCATGATTTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082-'45-37,'45-34,46-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.626 C2=0.840
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(33.3=78.3)
A:
PF0765312=SH3_2=PD(63.0=72.3)
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCTCATGGAATTGCC
R:
TGCTGGGAAATCATGAAGAGCC
Band lengths:
138-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types