RnoEX0080458 @ rn6
Exon Skipping
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185411650-185417487:+
Coord C1 exon
chr2:185411650-185411914
Coord A exon
chr2:185414224-185414364
Coord C2 exon
chr2:185417415-185417487
Length
141 bp
Sequences
Splice sites
3' ss Seq
CGTGCTGTTGTGCTTTGCAGCGT
3' ss Score
10.51
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
ACCTGTGCATGGAAAAGTCATTCCAGTTTGGAGGCCTCCCCCCAAAGGGGCCCCTGAGAGACCCCCACCCCCTAAACTTTCTGCAACCAAATCATCAAATAAGAATCTGCCTTTTAACCGCTCCTCCTCCGACATGGATCTTCAGAGAAAGCCGTGTCACTTGGCATCTGGACTCTCAAAAGCCAAGAGTCAGGTCTTTAAAAACCAAGATCCGGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGGAAATACATG
Seq A exon
CGTGGAGATGTACTTGTGATCCTGAAACAGGCAGAGAACAATTACCTGGAGTGCCGGCGGGGAGAAGGCACCGGCAGAGTCCACCCGTCCCAGATGAAGATTGTCACTCCCCTGGACGAGCACCCCAGAAGCAGACCTAAC
Seq C2 exon
GGGTCAGGCCACACTCAGAAGCCTGTAGACAGTGGCGCTCCTCACGCGGTGGCTCTTCACGACTTCCCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.617 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
PF0765312=SH3_2=PD(63.0=72.3)
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCCCTAAACTTTCTGC
R:
GAGGAGCGCCACTGTCTACA
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]