BtaEX0032318 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6666687-6670697:+
Coord C1 exon
chr17:6666687-6666755
Coord A exon
chr17:6666925-6667065
Coord C2 exon
chr17:6670625-6670697
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGTGGTATTGTACCTTACAGCGT
3' ss Score
6
5' ss Seq
AATGTGAGG
5' ss Score
4.51
Exon sequences
Seq C1 exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGATGTCATCCCGCAAAACCCTGGAGAACTTTCTTGTAAG
Seq A exon
CGTGGGGACGTCCTGGTGATACTGAAGCAGGCAGAAGGTAATTACTTGGAGTGCCGGAAGGGAGACGATGCCGGCAGAGTTCACCTGTCTCAGATGAAGATCATCACGCCGCTTGATGAACATCTTAGCAGCAGACCAAAT
Seq C2 exon
GACCCAAGCTGCCCTCAGAAGCCTGTTGACAGTGCTGCCCCTCATGCCATCGTTCTTCATGATTTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.255 C2=0.360
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(33.3=78.3)
A:
PF0765312=SH3_2=PD(63.0=72.3)
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCTCATGGAATTGCC
R:
TGCTGGGAAATCATGAAGAACGA
Band lengths:
138-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development