GgaEX6034183 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32697220-32698360:-
Coord C1 exon
chr4:32698319-32698360
Coord A exon
chr4:32698239-32698316
Coord C2 exon
chr4:32697220-32697292
Length
78 bp
Sequences
Splice sites
3' ss Seq
TACTTGGAGTGCCAGAAGAGAGG
3' ss Score
-25.46
5' ss Seq
AAGATAAGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
CTTATGGAGCAGAGCAGCAGTAATTACTTGGAGTGCCAGAAG
Seq A exon
AGGGAAACTGGCAAAGTTCCTCTGTCTCCTATGAAGATAATGACTTCCTTTGCTGAGTATCTAAAAGATGGGCGAAAG
Seq C2 exon
GATTCAAACAGCTCTCCAAAAGTTTCTGACACAAGTGCTCCCCATGCTGTAGCACTGCATGATTTTTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-'28-34,'28-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.269 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTATTCCCATTTGCTCCT
R:
CGCAGAAAAATCATGCAGTGCT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]