DreEX0065949 @ danRer10
Exon Skipping
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23711123-23714671:-
Coord C1 exon
chr1:23714431-23714671
Coord A exon
chr1:23712106-23712249
Coord C2 exon
chr1:23711123-23711198
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTATTCCCTACAGAAA
3' ss Score
10.55
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GCCGAGTGGAGGAAAAGTATTGCCTCCTCGTCCACCACCAGCTAAAACAGGCCCAGGAAGACCACCTCCTCCACAGACGAATAACTCCCAACGGCGACCATCTGATTCAGGATTTTCACAAATAGCTCCATCAAAACAACAGCCATCTCAATGGCAGCAACAAAACCGTAGAGCTTCTAAAAAGGGGCCTGCTCTACCACCAAGACCCAACCCTGGACATCGTCTTTACAACAAATACACG
Seq A exon
AAAAATGAAGTCCTTGTCTTACTCGAGGAGTTAGACAGCAGAACATTTGAATGCCAAGCAGGAAACACCAAGGGCACAGTGCAGAAAAGTCATATGAAGATAATCACACCTTTAACAGATTTATCCAGCAATTCACTACCACAG
Seq C2 exon
AAAACCAGTTCCTTTAGAGGAATGGGAGGAAATGCTGGATCTCTACAAGTGGAAGCCCTGTATGACTTCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.354 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF0765312=SH3_2=PD(63.0=70.8)
C2:
PF0001823=SH3_1=PU(17.4=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACCACCAGCTAAAACA
R:
TCCAGCATTTCCTCCCATTCC
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]