HsaEX0061138 @ hg38
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr8:100157906-100165973:+
Coord C1 exon
chr8:100157906-100158118
Coord A exon
chr8:100162279-100162420
Coord C2 exon
chr8:100165814-100165973
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATATTGTATTTCAGCTA
3' ss Score
8.09
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGAAGGCGGGGAAGGTGAACCTGTGGCCGTCGGCAGATCTGCAGATCTGCCGGACTGCGGGTCGGGGCGTGGCAGGGGCCTAGTCCCCGCCCCGGCCGTCAGCCTGTCGCCTCTGGCTCGGGCCGGGCGACGAGACCCTCCCTCAGCACCTGCAGTGCAGCCAGAGCCGGTGCGGCGGCCGCGACTTCCCCGACGCGGGGCGCTGAGAAGCA
Seq A exon
CTATGACCACCAAAGATTATCCATCATTGTGGGGCTTTGGAACAACAAAAACATTCAAAATTCCCATTGAACATCTAGATTTCAAATACATTGAAAAATGTTCAGATGTTAAACATCTGGAAAAAATTCTTTGCGTGCTCAG
Seq C2 exon
ATCTGGTGAGGAAGGATATTATCCTGAACTTACAGAATTTTGTGAAAAGCATCTTCAAGCCTTGGCCCCTGAAAGCAGAGCTTTGAGGAAAGATAAACCAGCAGCAACAGCAGCCAGTTTTACAGCTGAAGAATGGGAAAAAATTGATGGTGATATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-'0-3,'0-2,8-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCTGTCGCCTCTGG
R:
AGCTGTAAAACTGGCTGCTGT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development