RnoEX0084993 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:74995137-75000013:+
Coord C1 exon
chr7:74995137-74995237
Coord A exon
chr7:74997945-74998092
Coord C2 exon
chr7:74999854-75000013
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTATTATGTTTCAGCCA
3' ss Score
9.25
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CCAAGACCAAGGTTTTATATAGAAAGACTGAAAAGAAATACGGAAAAATTCTCTAGAGAACAATCCAAACCACCCTTTAGAAGCTGAGACTTAACGTTGAG
Seq A exon
CCATGACTGCTAAGGTTAAGGACCATCCACCACTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCATCGAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACAGCTGGAAAAAATTCTTTGTGTGCTAAG
Seq C2 exon
GTCTGGTGAAGAAGGCTATTATCCTGAACTCACGGAGTTTTGTGAGAAGCGCCTCACCGGCTTGGCTCCCAGAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGCCACAGCCTCCAGCTTTTCAGCAGAAGAGTGGGAAAAAATCGACAGCGATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'4-2,'4-0,6-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGACTGAAAAGAAATACGGAAA
R:
CCCACTCTTCTGCTGAAAAGCT
Band lengths:
218-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]