MmuEX7007694 @ mm10
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36179530-36183816:+
Coord C1 exon
chr15:36179530-36179761
Coord A exon
chr15:36181696-36181843
Coord C2 exon
chr15:36183657-36183816
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACATTATGTTTCAGCCA
3' ss Score
8.18
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTTCAGCCCCCAGCCCAAGCCGGAGGAAGGACTCCCTGCGCCAAAGCTTGCAGGTTGGCCCAAGAGCTAGTTCCCAGGCTCGTCCTAGACACTTTACCTGGGTCTGGCGGTGCCTGGAAACCGTTGCCATGGCTGGGGCGTGCCACTTCCGTTTCTGGCTGCAGAGGGCGCCGGCTGCCTGAGTAGGAGAAGCTGAGTTTTCACGTTACTGGGGTTACCAGGAAACGCTATG
Seq A exon
CCATGACTGCTAAGGCTAAGGACTGTCCATCATTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCATCGAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACACCTGGAAAAAATTCTTTATGTGCTGAG
Seq C2 exon
GTCTGGTGAAGAAGGCTACTATCCTGAACTCACGGAATTTTGCGAGAAGTGCCTCACCAACTTGGCTCCTAAAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGAGACAGCATCCAGCTTTTCAGCGGAAGAGTGGGAAAAAATCGACAGTGATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'1-9,'1-0,6-9=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTCGTCCTAGACACTT
R:
GTCCTTCCTCAGAGCTCGACT
Band lengths:
253-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types