HsaEX0061140 @ hg19
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101195603-101196961:+
Coord C1 exon
chr8:101195603-101195664
Coord A exon
chr8:101196184-101196290
Coord C2 exon
chr8:101196856-101196961
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTCTTTCATTTAAGATT
3' ss Score
8.86
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAAAATATTCTAAAAGACCAACTAAAAAGAAAACTCCAAGGGATTACGCGGAATGGGATAA
Seq A exon
ATTTGACGTGGAGAAGGAATGTTTAAAAATTGATGAAGATTACAAAGAAAAGACGGTAATAGACAAGTCACACTTGTCTAAAATTGAGACAAGAATAGATACAGCAG
Seq C2 exon
GTCTAACTGAGAAAGAAAAGGATTTTCTTGCCACTCGTGAAAAGGAGAAAGGAAATGAAGCTTTCAACTCAGGAGATTATGAAGAAGCAGTGATGTATTATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.054 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(39.4=72.2),PF0421213=MIT=PU(44.6=69.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCAACTAAAAAGAAAACTCCA
R:
TGGTATAATACATCACTGCTTCTTCA
Band lengths:
154-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)