GgaEX1054855 @ galGal4
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128180144-128183209:+
Coord C1 exon
chr2:128180144-128180211
Coord A exon
chr2:128182511-128182629
Coord C2 exon
chr2:128183104-128183209
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTATTTGTATTAATTTAAGGTT
3' ss Score
6.22
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
AATGAAAAGTTCCAAAACAAACAAAGAAATAAGAAAAACATACCACGGGATTACAGTGAATGGGATAA
Seq A exon
GTTTGATGTGGAAAAGGAGTGTTCTAAAATTGATGAAAGCAGTGAAGAAAACAACTCAAAAGCAAGATTCATTAGTAGACCACCTCCACCTCTAATTGAAAAGCAAGTAAACACAACTG
Seq C2 exon
GCATGACAAAGAAAGAGAAAATCTTCATTGCTACTCGGGAAAAAGAAAAGGGTAATGAAGCCTTTGCTAGTGGAGATTATGTGGAAGCAGTGACATATTACGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.683 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(39.4=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGTTCCAAAACAAACAAAGAA
R:
CGAGCGTAATATGTCACTGCT
Band lengths:
172-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]