MmuEX6053262 @ mm10
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36190472-36192109:+
Coord C1 exon
chr15:36190472-36190536
Coord A exon
chr15:36191126-36191235
Coord C2 exon
chr15:36192004-36192109
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTGTTGTTGTTTCAGATT
3' ss Score
11.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAACATATTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAATGGGATAA
Seq A exon
ATTTGATGTGGAAAAAGAATGTTCAAAGATTGATGAGGATTACAAAGAAAAGACTGTCATAAACAACAAGGCTCATCTGTCTAAAATTGAGACAAAAATAGAAACAGCAG
Seq C2 exon
GTCTGACTGAGAAGGAAAAGAGTTTTCTTGCCAATCGTGAAAAGGGAAAAGGGAACGAGGCTTTCTACTCTGGGGACTATGAAGAGGCCGTGATGTATTACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'8-10,'8-7,14-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.053 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(39.4=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGACAGCTAAGAAGAGGATTCCA
R:
TGGTGTAATACATCACGGCCT
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types