BtaEX0034191 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66380010-66381674:-
Coord C1 exon
chr14:66381610-66381674
Coord A exon
chr14:66381000-66381106
Coord C2 exon
chr14:66380010-66380115
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTATTATTTTTCATTTAAGATT
3' ss Score
7.57
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAAAAGAATTCTAAAAGTAGACCAGCTAAAAAGAAAATTCCGAGAGATTATGCAGAGTGGGATAA
Seq A exon
ATTTGACGTGGAAAAAGAATGTGCAAAACTTGATGAAGATAAAGAAAGAACTGTAATAAACAACAAATCACATTTGTCTAAAATTGAGACAAGACTAGATACAGCAG
Seq C2 exon
GTCTAACTGAAAAGGAAAAGGTTTTTATGGCTACGCGTGAAAAGGAAAAAGGAAATGAAGCTTTTAAGTCAGGAGATTATGAAGAAGCTGTAAAGTACTATACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.189 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(39.4=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAATTCTAAAAGTAGACCAGCT
R:
CGAGTATAGTACTTTACAGCTTCTTC
Band lengths:
170-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development