RnoEX0084995 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75007204-75009463:+
Coord C1 exon
chr7:75007204-75007268
Coord A exon
chr7:75008533-75008642
Coord C2 exon
chr7:75009358-75009463
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTGTTGTTATTTCAGATT
3' ss Score
9.75
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAACATCTTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAGTGGGATAA
Seq A exon
ATTTGATGTGGAAAAAGAGTGTTCAAAGATTGATGAGGATTACAAAGAGAAGACTGTCATAAACAACAAAGCTCATTTGTCTAAAATTGAGACGAAAATAGACACAGCAG
Seq C2 exon
GTCTGACTGAGAAGGAAAAGAATTTTCTTGCCAACCGTGAAAAGGGGAAAGGGAACGAGGCGTTCTACTCAGGAGACTACGAAGAGGCTGTGATGTATTACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'9-7,'9-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.132 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(39.4=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATCTTCTAAAAGTAAGACAGCT
R:
CTGGTGTAATACATCACAGCCTCT
Band lengths:
170-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]