HsaEX0068982 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170865314-170871876:+
Coord C1 exon
chr2:170865314-170865450
Coord A exon
chr2:170870351-170870482
Coord C2 exon
chr2:170871791-170871876
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCATTAATTTTTTTCTACAGATT
3' ss Score
10.69
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TCAGAAACAAATTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATATAGAGACTATAGCAAGACCCCGGGCTCACCAGACAATGATTTTCTCTTTATGTACTCTGTTGCTAG
Seq A exon
ATTAGGCAACAGAAGATTTGTGAAAACAAAATGTATTGATCTCATTTATATTCCCTTGATGAAGGAACACATGCTGGTCTCCGCTCGCTTTCTGTCCACTAGTATGAAATCCTTGTCCCTGCTTCCTTGCTG
Seq C2 exon
AACCAATTTAGAACTTGAATTGATTCATCGAGGAGGCAATTTGTGTTCAGGTGGTGCAAGCACAGCTGGCAAAAGGTCTTGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0080420=Syntaxin=PD(49.0=54.3)
A:
PF042387=DUF420=PD(56.3=88.9)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAGAGACTATAGCAAGACCCCGG
R:
TTAAACAAGACCTTTTGCCAGCTG
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)