RnoEX0096091 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56242357-56249065:+
Coord C1 exon
chr3:56242357-56242493
Coord A exon
chr3:56247646-56247779
Coord C2 exon
chr3:56248980-56249065
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCATTAATTTTTTTCTACAGATT
3' ss Score
10.69
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TCAGAAACCAACCTAAGTAAAGAAATGGAGTCTGTAATGAAAGATATAAAAAACACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCGCCAGACAATGACTTTCTCTTTATGTACTCTGTTGCTAG
Seq A exon
ATTAGGCAACAGAAGATTTGTGAAAACAAAATATATTGATCTCATTTATATTCCCTTGATGAAGGAACACATGCTGGTCTCCGCGCTCGCTTTCTGTCCACTAATATGAAATCCTTGTCCCTGCTTCCTTGCTG
Seq C2 exon
AACCAATTTAGAGCTGGAGCTGATTCACAGAGGAGGCAGCCTGTGCTCAGGCGGTGCAAGCACGGCTGGGAAGAGGTCTTGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011380fB16037
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAACCTAAGTAAAGAAATGGAGT
R:
TCAAACAAGACCTCTTCCCAGC
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]