RnoALTD0032717-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56242357-56249065:+
Coord C1 exon
chr3:56242357-56242493
Coord A exon
chr3:56242494-56242497
Coord C2 exon
chr3:56248980-56249065
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
CGTCAATGCTTTGCTTACAGAAC
3' ss Score
6.59
Exon sequences
Seq C1 exon
TCAGAAACCAACCTAAGTAAAGAAATGGAGTCTGTAATGAAAGATATAAAAAACACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCGCCAGACAATGACTTTCTCTTTATGTACTCTGTTGCTAG
Seq A exon
GTAG
Seq C2 exon
AACCAATTTAGAGCTGGAGCTGATTCACAGAGGAGGCAGCCTGTGCTCAGGCGGTGCAAGCACGGCTGGGAAGAGGTCTTGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-51-56,52-56-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAGCAAGACCCCAGGCTCG
R:
TGCCTCCTCTGTGAATCAGCT
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]