HsaEX0072181 @ hg19
Exon Skipping
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:26955]
Coordinates
chr3:42702977-42704619:+
Coord C1 exon
chr3:42702977-42703124
Coord A exon
chr3:42703553-42703605
Coord C2 exon
chr3:42704504-42704619
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTACCTTCTGGTCCTCATAGGGC
3' ss Score
9.44
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
TGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACGGCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAAGCACATGGTTG
Seq A exon
GGCTTCAGGCCTCTCTGAATGCAGCCTCCCCTCAGGGTTCATGCCTGGACACA
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.045
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(87.5=42.0),PF134651=zf-H2C2_2=PU(26.9=14.0),PF0013017=C1_1=PU(6.0=6.0)
A:
PF128742=zf-met=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF0013017=C1_1=FE(76.0=100),PF134651=zf-H2C2_2=PU(65.4=43.6),PF054957=zf-CHY=PU(12.5=23.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCTACGCAGAGAAGAAG
R:
ATGCTGCGCTTGAAGGACTTT
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)