MmuEX0053531 @ mm9
Exon Skipping
Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121674601-121675700:+
Coord C1 exon
chr9:121674601-121674748
Coord A exon
chr9:121675063-121675115
Coord C2 exon
chr9:121675585-121675700
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCACCTTTCGGCCCTCACAGGGC
3' ss Score
9.28
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
TGCATGACATGTGGCAAAGCCTTCAAGAAACTGTGGTCTCTTCATGAGCACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGAGAAGAAGTTTCACACCATGGCGCACGTGCGCAAGCACATGGTTG
Seq A exon
GGCTTGAGGCATCGCCTGAGTGCAACCTCCCCCAGGGGTCAGACCTGGACACA
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGTGAGACCTGTGGGAAGTCCTTCAAGCGCAGTATGTCGCTGAAGGTCCACTCGCTGCAGCACTCGGGGGAGAAACCTTTCCGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419-'4-4,'4-3,5-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.164
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(0.1=0.0),PF121713=zf-C2H2_jaz=WD(100=46.0)
A:
PF121713=zf-C2H2_jaz=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACGCGGAGAAGAAGTTC
R:
GCTTGAAGGACTTCCCACAGG
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: