RnoEX0100552 @ rn6
Exon Skipping
Gene
ENSRNOG00000019382 | Zbtb47
Description
zinc finger and BTB domain containing 47 [Source:RGD Symbol;Acc:1562434]
Coordinates
chr8:130404466-130405562:+
Coord C1 exon
chr8:130404466-130404613
Coord A exon
chr8:130404936-130405246
Coord C2 exon
chr8:130405447-130405562
Length
311 bp
Sequences
Splice sites
3' ss Seq
TCACCTTTTGGCCCTCACAGGGC
3' ss Score
9.35
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TGCATGACGTGTGGCAAAGCCTTCAAGAAGCTGTGGTCTCTTCACGAACACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGAGAAGAAGTTTCACACCATGGCGCATGTGCGCAAGCACATGGTTG
Seq A exon
GGCTTCAGGCATCTCCTGAGTGCAACCTCCCCCAGGGGTCACACCTGGACACAGTAAGGAGGCCTCCCCAAGAGTGCTACCCACCCCACTCACAGGCAAGGCTGCACGGCCTCTAGTGGGCCTGGCTGAGTGTCTGGATTCTGTGGTCACCTCTTCTCACTCAACTGGGCTCCAAGCTCCAGGGCGGAGTGGTCCAGACAGACAGACAGTCTCTGGCAGACACACCTCCCTTCCTCCACTGGAAAGTGTAAACTGCATGGGATGGGGACCCTGGGATCCAGGTGTTGGCCAGGAGCATGCTGGGTAACCAG
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGTGGGAAGTCCTTCAAGCGCAGTATGTCGCTGAAGGTCCATTCGCTGCAGCACTCGGGGGAGAAGCCTTTCCGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019382_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(26.9=14.0)
A:
NO
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
Main Inclusion Isoform:
ENSRNOT00000043346fB16769
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACGTGTGGCAAAGC
R:
CTCACAGCGGAAAGGCTTCTC
Band lengths:
263-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]