HsaEX0072181 @ hg38
Exon Skipping
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr3:42661485-42663127:+
Coord C1 exon
chr3:42661485-42661632
Coord A exon
chr3:42662061-42662113
Coord C2 exon
chr3:42663012-42663127
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTACCTTCTGGTCCTCATAGGGC
3' ss Score
9.44
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
TGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACGGCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAAGCACATGGTTG
Seq A exon
GGCTTCAGGCCTCTCTGAATGCAGCCTCCCCTCAGGGTTCATGCCTGGACACA
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.060
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(26.9=14.0)
A:
PF128742=zf-met=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
Main Inclusion Isoform:
ENST00000505904fB7929
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCTACGCAGAGAAGAAG
R:
ATGCTGCGCTTGAAGGACTTT
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development