HsaEX0073327 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129362951-129370294:-
Coord C1 exon
chrX:129370188-129370294
Coord A exon
chrX:129364484-129364701
Coord C2 exon
chrX:129362951-129363108
Length
218 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTTCCTCTTTCAGCAT
3' ss Score
10.95
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTACAAATACCTCATCTCCATATGATGCTGGAGCAGATTACCTAAGAGCTTGTCCAAAGTGCAATGTTCAGTTCAATCTTTTGGATCCTTTGAAATACCACATGAAG
Seq A exon
CATTGTTGTCCAGACATGATAACTAAATTTTTGGGAGTAATTGTTAAATCAGAACGTCCATGTGATGAAGACAAGACTGATTCAGAGACAGGAAAGTTGATCATGTTAGTCAATGAGTTTTATTATGGAAGGCATGAAGGAGTCACTGAGAAAGAGCCAAAGACTTACACAACCTTTAAATGCTTCAGTTGCTCGAAAGTTCTTAAAAATAATATTAG
Seq C2 exon
GTTTATGAACCACATGAAACATCACTTGGAACTTGAGAAGCAGAACAATGAAAGCTGGGAAAACCACACCACCTGCCAGCACTGTTACCGGCAATATCCCACACCCTTCCAACTGCAGTGCCACATTGAGAGTACACACACTCCCCATGAGTTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.083 A=0.027 C2=0.056
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(3.3=16.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTCATCTCCATATGATGCTGGA
R:
CTCATGGGGAGTGTGTGTACT
Band lengths:
252-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)