RnoEX0101188 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135390453-135398709:-
Coord C1 exon
chrX:135398600-135398709
Coord A exon
chrX:135394720-135394940
Coord C2 exon
chrX:135390453-135390610
Length
221 bp
Sequences
Splice sites
3' ss Seq
TGCTATTTCTCCTTTTTCAGCGT
3' ss Score
10.68
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATATGAATACCTCATCAATTCAGTCTGCAGCCGGAAAACCTTCACTACGATCTTGTCCAAAGTGCAATGTTAAGTTCAGTCTTTTGGATCCTTTGAAGTGCCACATGAAG
Seq A exon
CGTTGCTGCCCAGACATGATAAATAAGTTTCTGGAAACTCTCAAATCAGAAAATTCAAAGGCTGTAAGCAGAGCTATCATTGGCTCAGATAAAGAAAAATTGATCATGCTAGTTAGTGACTTTTATTATGGAAGACATGAAGGAACTATTGAGGAAGACCAGAAGGCTCCCACAACTTTTAAATGCTTCAGTTGCACAAAAGTTCTTAAAAATAATATTAG
Seq C2 exon
GTTCATGAACCACATGAAACACCACTTGGAATTTGAAAAACAGAACAATGAGACCTGGGAAAGCCATACTACATGCCAACACTGTTATCGGCAGTATCCCAACCCTTTCCAGCTACAATGCCACATTGAGAGTACACATACTCCTCACGATTTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(3.9=18.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCATCAATTCAGTCTGCAGC
R:
AGAAAAATCGTGAGGAGTATGTGT
Band lengths:
260-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]