MmuEX0053162 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48559667-48566817:-
Coord C1 exon
chrX:48566708-48566817
Coord A exon
chrX:48563682-48563902
Coord C2 exon
chrX:48559667-48559824
Length
221 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCCTCCTCTTTCAGCGT
3' ss Score
12.13
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATGTGAATACCTCATCAGTTCAGTCTGCACCTGGATCATCTTCACTAAGATCTTGTCCAAAGTGCAATGTTAAGTTCCGACTTCTGGATCCTTTGAAGTGCCACATGAAG
Seq A exon
CGTTGCTGCCCAGACATGATAAATAAGTTTCTGGAAACTCTCAAGTCAGAAAATTCAAAGGCTGTAAGCAAAGCTACCACTGACTCAGATAAAGAAAAACTGATCATGCTTGTCAGTGATTTTTATTATGGAAGACATGAAGGAACTATTGAGGAAAGCCAGAAGACTCACACCACTTTTAAATGTTTCAGTTGCACAAAAGTTCTCAAAAATAATATTAG
Seq C2 exon
GTTCATGAACCACATGAAACACCACTTGGAACTTGAAAAGCAGAACAACGAGACCTGGGAAAGCCATACTACATGCCAACACTGCTACCGGCAGTACCCCAACCCCTTCCAGCTCCAGTGCCACATTGAGAGTACACATACTCCTCATGATTTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.095 C2=0.056
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(3.9=18.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCATCAGTTCAGTCTGCAC
R:
AGAAAAATCATGAGGAGTATGTGTAC
Band lengths:
260-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types