HsaEX0074482 @ hg19
Exon Skipping
Gene
ENSG00000167232 | ZNF91
Description
zinc finger protein 91 [Source:HGNC Symbol;Acc:13166]
Coordinates
chr19:23540501-23557566:-
Coord C1 exon
chr19:23557440-23557566
Coord A exon
chr19:23556544-23556639
Coord C2 exon
chr19:23540501-23545527
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGTTATTTTTAATAAAACAGGTA
3' ss Score
4.34
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGACTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCCGGAGGAGTGGCAATGTCTGGACACTGCACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGCCTTCCTGG
Seq A exon
GTATTGCTCTCTCTAAGCCAGACCTGATTACTTATCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGCAACATGAGATGGTGGATGAACCCACAG
Seq C2 exon
GTATATGTCCTCATTTTCCTCAAGACTTTTGGCCAGAGCAGAGCATGGAAGATTCTTTTCAAAAAGTATTACTGAGAAAATATGAAAAATGTGGACATGAGAATTTACAGTTAAGAAAAGGTTGTAAAAGTGTGGATGAGTGTAAGGTGCACAAAGAAGGTTATAATAAACTTAACCAGTGTCTCACAACTGCCCAGAGCAAAGTATTTCAATGTGGGAAATATTTGAAAGTCTTCTATAAATTTTTAAATTCAAACAGACATACGATAAGACATACTGGAAAGAAATGCTTCAAATGTAAAAAATGTGTCAAGTCATTTTGCATCCGTTTACACAAAACCCAACATAAATGCGTTTATATTACAGAGAAGTCCTGTAAATGTAAAGAATGTGAAAAAACCTTTCATTGGTCCTCAACCCTTACTAATCATAAGGAAATTCATACTGAAGATAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAGCAGCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167232_MULTIEX1-2/8=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.031
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF102634=SprT-like=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF102634=SprT-like=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF0009621=zf-C2H2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3)


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTTAGGGATGTGGCCA
R:
CATGCTCTGCTCTGGCCAAAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)