HsaEX1003759 @ hg38
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:HGNC:23643]
Coordinates
chr9:38588551-38596403:-
Coord C1 exon
chr9:38595486-38596403
Coord A exon
chr9:38593760-38593909
Coord C2 exon
chr9:38588551-38588663
Length
150 bp
Sequences
Splice sites
3' ss Seq
TAACAAAAATATTTTGTCAGGTG
3' ss Score
4.38
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TTTCTAGACATGAAAAAATGGGTTCTAATATTTCTCAACTAACAGATAAGAATGAGTTGCTTACTGAACAGGTCCATAAAGCTCGGGTGAAGTTCAATACCTTAAAAGGTAAGCTCCGTGAGACAAGAGATGCTCTCAGGGAAAAGACATTGGCTTTAGGAAGTGTACAGCTGGACCTAAGGCAAGCACAGCATCGAATAAAGGAAATGAAGCAGATGCATCCAAATGGAGAAGCTAAAGAAAGTCAATCCATTGGAAAGCAGAACTCTTTAGAGGAGAGAATACGTCAACAAGAACTTGAAAATCTCTTGCTTGAACGACAACTAGAGGATGCTCGTAAGGAAGGCGATAATAAAGAGATAGTCATTAATATCCACAGAGACTGTCTTGAGAATGGAAAGGAAGATCTTCTAGAAGAAAGAAATAAGGAATTAATGAAAGAATATAATTATTTAAAAGAAAAACTGCTTCAGTGTGAAAAAGAAAAAGCAGAAAGAGAA
Seq A exon
GTGATTGTGAGAGAATTTCAAGAAGAACTGGTCGATCACCTTAAAACATTTTCAATATCAGAGTCTCCACTGGAAGGTACATCACATTGTCATATTAATTTGAATGAGACATGGACTTCAAAGAAGAAATTATTTCAAGTAGAAATTCAA
Seq C2 exon
CCTGAAGAAAAACATGAAGAATTCAGAAAACTTTTTGAATTAATATCATTACTGAACTATACTGCGGACCAAATAAGAAAGAAAAATCGTGAATTAGAAGAAGAGGCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.4)
A:
PF0003816=Filament=PU(5.6=32.0)
C2:
PF0003816=Filament=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCTCGTAAGGAAGGC
R:
TGGTCCGCAGTATAGTTCAGT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains