HsaINT1003700 @ hg38
Intron Retention
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:HGNC:23643]
Coordinates
chr9:38593760-38596403:-
Coord C1 exon
chr9:38595486-38596403
Coord A exon
chr9:38593910-38595485
Coord C2 exon
chr9:38593760-38593909
Length
1576 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TAACAAAAATATTTTGTCAGGTG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GATTCTCAAAGTTACGGAAAAAAGAAGGATGCGATGTATGGAAATTTTATGTTGAAGAAAGACATTGCCATGCTCAAAGAGGAATTATATGCAATAAAAAATGACAGTCTCAGAAAGGAAAAGAAATATATTCAGGAAATTAAAAGCATTACAGAAATAAATGCTAACTTTGAAAAGAGTGTAAGACTCAATGAAAAAATGATAACAAAAACAGTGGCCCGGTATTCGCAACAGCTTAATGATCTGAAAGCTGAGAATGCAAGGCTGAATTCAGAATTGGAGAAGGAAAAACACAACAAAGAAAGACTAGAAGCTGAAGTTGAATCCCTCCATTCTAGCCTGGCCACTGCTATAAATGAGTACAATGAAATTGTGGAAAGAAAAGACCTAGAACTAGTTTTATGGAGAGCAGATGATGTTTCTAGACATGAAAAAATGGGTTCTAATATTTCTCAACTAACAGATAAGAATGAGTTGCTTACTGAACAGGTCCATAAAGCTCGGGTGAAGTTCAATACCTTAAAAGGTAAGCTCCGTGAGACAAGAGATGCTCTCAGGGAAAAGACATTGGCTTTAGGAAGTGTACAGCTGGACCTAAGGCAAGCACAGCATCGAATAAAGGAAATGAAGCAGATGCATCCAAATGGAGAAGCTAAAGAAAGTCAATCCATTGGAAAGCAGAACTCTTTAGAGGAGAGAATACGTCAACAAGAACTTGAAAATCTCTTGCTTGAACGACAACTAGAGGATGCTCGTAAGGAAGGCGATAATAAAGAGATAGTCATTAATATCCACAGAGACTGTCTTGAGAATGGAAAGGAAGATCTTCTAGAAGAAAGAAATAAGGAATTAATGAAAGAATATAATTATTTAAAAGAAAAACTGCTTCAGTGTGAAAAAGAAAAAGCAGAAAGAGAA
Seq A exon
GTAAGTATGAAGAAAACTATAAACTTCTGGAAAGAAAATTTAAATATTTCATTCTGGCTATATGTTGAACCTAGTTCAATATACAAATAAATAGATGAAAATGTGTTTACCATTCTGTATAATTCCATTTACATGAATCATCCAGGAAATACATCTATAGGGACAGAAAGATGATTAATGTTTGTGTAGGCCTGGGGCTGGAAGCGGGTCGTGACTGCTAATGGGCATTAGGGATTGTCCTGGAGTGATGAAAATGTTCTAAAGTTGGATTGTAGAGATGGTTGCACGACACAGTAAATTTACTAAAAATCTTTGAACTGTTTGTTAAAAAAGATAAATTCTATAAATCATATTTCAACAAAGCTGTTTGAATAAAAATCATATTTCAACAAAGCTGTTTTAGTAAACCAAAAAAGTGTTTACTATATCAGCTTGGAAACATGCTTTGTTTCCAGGAGATAAAAGGTAGAGCTGACAAGATGCTTTCCTTTGAGTAAAGACATTATGTCACCTATGAAATGTTAGTAGATGCAGAGCAATGCTGATAAGGTGTGTAGTCTTAGACTACTGAAATAAGAAATGTAACGTCTTCATGTTGCCGCATTTTAAGAGCATAATGAAGCAGGTAAGTGGAAATGCTTGTACCTGAAATGTGTATTTTGAAAATCAGATTCAATTAAGTGAGCTGCTTTGACACTTAATTCTAGATTTTCCAGATGAACTGAAGTGTGTTGCTGTGTCTTGTGATGCTTTTCCTTCAGTGGCTCTCTCTTATATGTATTTTAGTTGGTGTAACTTTGTTTTGATTCATGCCAATGTGACTTAAGTCTGAAAATATGTCAGTCTCACATTATGTATTTTTCTGACCACTTAGTATTTTAAAGACTTCTACTTGTTATAAAATCACAATTTGGAATAAATGTGGTAAATTTTAGCAAAAAAATATTTGATGTAATGTTTCCACTGGCAGGTATTTATAATTTACTGTGAATATTTTTATGAGTAATTAGCTCATAATTTACATTTTAAGTCTCAATGACTATCATTTGGATATAATTCTTTCCAGTACAAAGATACTTTTAGCTGTCTGTGATTTATGAGTTTGACATTGAATCCCCATTTTCAGACTAATGAGGGGTGGCAGAGTTCACAGAGAGTGGGATTGAAGTTTGTACGGGACAGAGTTGTAGGAGCTGAGGTCAGGGAGGGAGGTAGAGGCCATGTTACCTAGGGCCTTGAAGGCCGTTGGAATTTTATTCTGAGGTAGGAATCCGTTGGAAGGATTTCAACAGGCGACTGAATATGTGAGGAACTCAGGTTGAGTTGAGGGTCTAAGGTGAGTGAATAGCGGGCTGGATCAATCTGTCATGTAAGAGAATACCAATTTGGCAGGAATATAACACCTTCTATGTCCCTCACTGAATTCAGTAATAAAGAAGAAAGTGTACATATGAGGAAAAGAAAGTGAATCTGTGTGTGTGGTAATAATTTTCAAAGTATGTATGCTAGACTTAAATATTAACATAATTTAATAATAAGCCACTTTATAAAATTGGTAACAAAAATATTTTGTCAG
Seq C2 exon
GTGATTGTGAGAGAATTTCAAGAAGAACTGGTCGATCACCTTAAAACATTTTCAATATCAGAGTCTCCACTGGAAGGTACATCACATTGTCATATTAATTTGAATGAGACATGGACTTCAAAGAAGAAATTATTTCAAGTAGAAATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071:ENST00000399703:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.4)
A:
NA
C2:
PF0003816=Filament=PU(5.6=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGGCAAGCACAGCATCGA
R:
CGACCAGTTCTTCTTGAAATTCTCT
Band lengths:
358-1934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains