HsaEX1010890 @ hg38
Exon Skipping
Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450 family 4 subfamily A member 22 [Source:HGNC Symbol;Acc:HGNC:20575]
Coordinates
chr1:47143269-47144463:+
Coord C1 exon
chr1:47143269-47143393
Coord A exon
chr1:47143762-47143916
Coord C2 exon
chr1:47144357-47144463
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTTCATACTCTCCCTCAGGAA
3' ss Score
9.61
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGAGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAG
Seq A exon
GAATTCTCAGTCCTACATCCAGGCCATTAGTGACCTGAACAGCCTGGTTTTTTGCTGTATGAGGAATGCCTTTCATGAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
Seq C2 exon
ACCAAGTGATCCAACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAGGCACTTGGATTTTCTGGACATCCTCCTCTTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=FE(12.8=100)
C2:
PF0006717=p450=PD(3.6=16.2)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGAAGAGCTCCTTGGC
R:
TTTGGCCAAGAGGAGGATGTC
Band lengths:
229-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains